Skip to main content
Username
Password
Log in
Forgotten your username or password?
Biologia
Moodle community
Moodle Philosophy
Moodle Main Web Site
Moodle Docs
Associazione Italiana Utenti Moodle
UniTO
Portale di Ateneo
Campusnet SB
Campusnet LM-Biologia
Dip Scienze della vita
iLearn homepage
HelpDesk
Crea Ticket
My Media
Search courses
Submit
LM: Biologia Cellulare e Molecolare Avanzata (2009-2010)
Review: On RNA-Seq methods and outcome (Wang et al 2009)
Click
Wang_2009_RNA-Seq_review.pdf
link to view the file.
◄ Lezione 20 novembre Pervasive genomic transcription (with happenings...)
Jump to...
Jump to...
News forum
General informations....
podcast of the lectures (mp3)
Student's talk CALENDAR
Subjects for Student's talks, important
INFO: student's talk - AVVISO importante per presentazioni
read this article: Whitmarsh_jip_98
podcast of the lecture: Sept. 30, 2009
pdf lezioni
Task N.7: site-directed mutagenesis
Read the article: Verhey et al. 2001
Read the article: Blasius et al.
supplementary material: movies of Blasius et al
podcast of the lecture: october 05: part 1
podcast of the lecture: october 05: part 2
podcast of the lecture: october 07, part 1
podcast of the lecture: october 07, part 2
pdf_lezioni
Find and read the article: Parada et al. 2004
podcast of the lecture: october 09, part 1
podcast of the lecture: october 09, part 2
pdf_lezioni
Read the articles
podcast of the lecture: october 12: part 1
podcast of the lecture: october 12, part 2
podcast of the lecture: october 14, part 1
podcast of the lecture: october 14, part 2
pdf_lezioni
podcast of the lecture: october 16, part 1
podcast of the lecture: october 16, part 2
Read the article: Dikic et al 09, ubiquitin structure & function
pdf_lezioni
Read this article: Lum et al. Autophagy Cell 2005
Read the article (optional): Mol_Cell_2009_Kirkin.pdf
pdf delle lezioni
pdf of the lecture N.09
podcast 091021_01: stem cells
podcast 091021_02: stem cells
read this article: Takahashi et al, stem cells cell 2006
Read the article (optional): Pei et al. 2009, dedifferentiation review.pdf
Task 8: Where is the mistake....
Seminario "biosafety/biosecurity tools and policies", Malcom Dando and Giulio Mancini. Venerdì 23 ottobre 2009, 11-13
ppt_seminar
261009 lezione I parte
261009 lezione II parte
261009-articolo Zimmer
261009-movie1
261009-movie2
261009-movie3
261009-movie4
261009-MP3-1 parte
261009-MP3-2 parte
281009_read this article: Stein-Lavigne
281009 MP3 1 parte
281009 MP3 2 parte
lezione 281009
301009 - MP3- I parte
301009 - MP3- II parte
lezione 301009
021109 MP3 1 parte
021109 MP3 2 parte
lezione 021109 transgenici-knockout
041109 MP3 1 parte
lezione 021109 NRG1/ErbB4 alternative splicing
041109 MP3 2 parte
lezione 041109 NRG1/ErbB4 migrazione I parte
read this paper: Anton_NatNeuro_2004
paper Flames 2004 per "Stripe Choice Assay"
protocollo stripe choice assay
task "stripe choice assay"
061109 MP3 1 parte
061109 MP3 2 parte
lezione 061109 NRG1/ErbB4 migrazione II parte
lezione 06-091109 NRG1/ErbB4 ubiquitinazione
paper Sundvall 2008
091109 MP3 1 parte
091109 MP3 2 parte
paper Sardi 2006
lezione 091109 ErbB4 nucleare 1 parte
111109 MP3 1 parte
111109 MP3 2 parte
lezione 111109 ErbB4 nucleare 2 parte
materiale su Semaphorins-Plexin-Neuropilin
read this paper about RNA interference false positives and negatives
lecture: 13 Nov - The Organization of Genomes (slides)
Assignment BMG1: nucleotide sequence in database
Assignment BMG2 - Identificazione delle parti di una sequenza genica
lezione 16 novembre - Analysis of gene expression
Audio-Analysis of gene expression_MP3_stream
Article: Microarray of sporulating yeast (Chu et al, 1998)
Assignement BMG3 Choose a microarray for your experiment
Assignment BMG4 - Choose a beadarray for your experiment
lezione 18 novembre - Genome level transcriptome analysis
Review: Tiling arrays (Jonhson et al., 2005)
Review: What is a gene post-ENCODE? (Gernstein 2007)
Audio lezione 18-11-09
Lezione 20 novembre Pervasive genomic transcription (with happenings...)
Article: RNA-Seq on human poly(A)+ (Sultan et al. 2008)
Audio-lesson 4-Part 1
Audio-lesson 4-Part 2
Audio lesson 4 - Part 3
Lezione 23 novembre - Transcripts and promoters
Review: Mammalian promoters (Sandelin 2007)
Assignment BMG5: how to verify bioinformatic results
Lezione 25 novembre - Genome annotations
Audio lezione 25-11-09
Review: A very good review on small RNAs (Ghildiyal, 2009)
Article: Identification of human promoters (Kim et al 2005)
Assignment BMG6 - what can we conclude ?
Assignment BMG7: micro RNA specificity
Lezione 27 novembre - One gene more products
Audio lezione 27-11-09
Review: A review on Alternative Splicing in the pre-deep-sequencing era. (Matlin 2005).
Article: Alternative Splicing by RNA-Seq (Wang et al 2008)
Assignment BGM8: find the right protocol
Lezione 30 novembre - Chromatin
Review: Histone modifications and interacting proteins (Kouzarides 2007)
Audio lezione 30-11-09
Lezione 2 dicembre - Silencing & epigenetics
Review: Microarrays for chromatin status (Hoheisel 2006)
Review: Epigenetics and developent (Reik 2007)
Lezione 4 dicembre - Post-transcription & proteomics
Audio lezione 4-12-2009
Review: Proteome analysis using Mass Spectrometry (Gstaiger 2009)
Article: Comparative miRNA effect on mRNA and proteome (Selbach et al., 2008)
Programma svolto dal 13/1 al 4/12 (modulo per NU e BI)
Lezione 9 dicembre - Heterochromatin
Audio lezione 09-12-2009
Lezione 11 dicembre - Boundaries and territories
Audio lezione 11-12-2009
Review: Boundaries (Lunyak 2008)
Review: Active loops (Fraser 2007)
Lezione 14 dicembre - Methylomes
Audio lezione 14-12-2009 1° parte
Audio lezione 14-12-2009 2° parte
Article: genome-wide promoter CpG-methylation analysis (Weber 2007)
Assignment BMG8: problems with bisulfite conversion and deep-sequencing
Lezione 16 dicembre - Transcriptional activation
Audio lezione 16-12-2009
Article: interchromosomal interactions mediate Olfactory Receptor choice (Lomvardas 2006)
Lezione del 18 dicembre - transcription factor mapping
Article: ER mapping genome-wide (Carroll 2006) (Not mandatory)
Review: Transcription factor mapping genome-wide
Audio lezione 18-12-2009
Lezione 21 dicembre - coregulator dynamics
Article: Coactivator dynamics at a single gene after activation (Metivier 2003)
Review on coregulator cycling on nuclear receptors (Perissi 2006)
Audio lezione 21-12-2009
Lezione 8 gennaio 2010 - Signals and combinatorial transcriptional control
Audio lezione 08-01-2010
Résumé (Zhu et al., 2006)
Assignment BMG 9 - Differences between signal transduction pathways
Assignment BMG 10 - How to resolve an interaction dilemma?
Lezione 11 gennaio - Regulated Alternative Splicing
Audio lezione 11-01-2010
Review on the mechanisms of Alternative Splicing regulation - Chen & Manley, 2009.
Review on RNA processing regulation, with genome-wide methods. Licatalosi & Darnell, 2010.
Lezione del 13 gennaio - Processing to export
Audio lezione 13-01-2010
Review on "Cotranscriptionality" - Perales & Bentley, 2009.
Review on the biogenesis of RNA and export (Luna 2008)
Assignment BMG 11 - A method to study RNA-binding protein targets
Assignment BMG 12 - Hypothesis on Dscam mechanism.
Lezione del 15 gennaio - RNA localization
Audio lezione 15-01-2010
Review on RNA localization - Holt 2009
Article: RNA localization in yeast (Jambhekar 2005)
Lezione 18 gennaio - Control of RNA decay and translation
Article: miRNA targets (Grimsom et al., 2007)
Audio lezione 18-01-2010 1°parte
Audio lezione 18-01-2010 2°parte
Lezione supplementare 1 - 20/1/2010 - Clock genes (by Iachia-i- Blaca / Fava)
Lezione supplementare 2 - 20/1/2010 - Imprinted genes (by Bethaz-Ferrero)
Lezione supplementare 3 - 20/1/2010 "Methylome" by Macrì, Macrì, Raimo.
Audio lezione 20-01-2010
Article: Clock gene analysis (Zhang 2009)
Article: Imprinted gene by microarray (Steinhoff 2009)
Article: Methylome by deep-sequencing (Lister 2009)
Lezione del 22 gennaio - Alternative splicing in disease
Audio lezione 22-01-2010
Article: RNA-Seq on human poly(A)+ (Sultan et al. 2008) ►
Back
